Projects

Empowering Research - ATAC-seq pipeline development

Building a reproducible workflow for handling ATAC-seq data

C. elegans growth and development

PhD Dissertation -- Mechanisms of growth control in developing *Caenorhabditis elegans*

RNA-seq - Impact of diet on C. elegans expression patterns

Implementing a bulk RNA-seq pipeline to process _C. elegans_ expression data

Trajectory Inference

Implementing trajectory analysis methods in single-cell RNAseq data

easyXpress

An R package to analyze and visualize high-throughput *C. elegans* microscopy data generated using CellProfiler

Bacterial microcompartments

Developing a flux model to explore the effects of bacterial compartmentalization strategies on fluxes and metabolite concentrations

Summer of _C. elegans_

Lessons and presentation documents for summer 2020 research students