Projects
Empowering Research - ATAC-seq pipeline development
Building a reproducible workflow for handling ATAC-seq data
C. elegans growth and development
PhD Dissertation – Mechanisms of growth control in developing Caenorhabditis elegans
RNA-seq - Impact of diet on C. elegans expression patterns
Implementing a bulk RNA-seq pipeline to process C. elegans expression data
Trajectory Inference
Implementing trajectory analysis methods in single-cell RNAseq data
easyXpress
An R package to analyze and visualize high-throughput C. elegans microscopy data generated using CellProfiler
Bacterial microcompartments
Developing a flux model to explore the effects of bacterial compartmentalization strategies on fluxes and metabolite concentrations
Summer of C. elegans
Lessons and presentation documents for summer 2020 research students